Gene family contraction and expansion
WebJan 20, 2024 · Gene families that have large gene copy number variance can cause parameter estimates to be non-informative. You can remove gene families with large variance from your dataset, but we found that … WebSep 20, 2024 · The Fragile X-related disorders (FXDs), which include the intellectual disability fragile X syndrome (FXS), are disorders caused by expansion of a CGG-repeat tract in the 5′ UTR of the X-linked FMR1 gene. These disorders are named for FRAXA, the folate-sensitive fragile site that localizes with the CGG-repeat in individuals with FXS. …
Gene family contraction and expansion
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WebFeb 12, 2024 · Rosa chinensis var. spontanea, an endemic and endangered plant of China, is one of the key ancestors of modern roses and a source for famous traditional Chinese medicines against female diseases, such as irregular menses and dysmenorrhea. In this study, the complete chloroplast (cp) genome of R. chinensis var. spontanea was … WebPhylogenetic tree, gene family contraction and expansion and time line divergence of pineapple among the subclass Commelinidae. The phylogenetic tree was constructed using 409 single-copy-genes...
WebGenome annotation and gene family expansion analysis By implementing de novo repeat prediction tools at Repbase, we found that 92.91% of the estimated celery genome was composed of repetitive sequences, more than twice that in carrot (46%) and consistent with the larger celery genome size (Figure 1b; Table S14 ). WebThis is a list of gene families or gene complexes, i.e. sets of genes which are related ancestrally and often serve similar biological functions.These gene families typically …
WebFeb 17, 2024 · Genome-wide analyses included gene family expansion/contraction, positive selection, and diverged sequence (acceleration) compared to other placental mammals, identifying selection in... WebEstimation of gene family expansion and contraction using CAFE. (a) Clock calibrated phylogenetic tree showing the number of gene families significantly (P-value ≤ 0.01) expanded (red),...
WebNov 2, 2024 · Gene family expansion and contraction analysis were performed using the CAFÉ v4.2 software (De Bie et al., 2006). Gene gain or loss along each lineage across the species-specific phylogenetic tree was identified under a random birth and death model using the maximum likelihood method.
WebMar 14, 2008 · A gene family is a set of genes derived by duplication of an ancestral gene. Various gene families, from small to large and from uniform to diverse, reflect effects of natural selection,... name field in excelWebOct 30, 2024 · Genes showing significant upregulation relative to vegetative mycelium and a close to constant expression in all complex multicellular developmental stages. Supplementary Table 15 Genes … meech 983v2 static locatorWebAug 5, 2016 · Comparative genomics revealed contractions of gene families encoding carbohydrate active (CAZymes) and proteolytic enzymes specifically within host-specific … name fileupload is not definedWebThe gene families that have undergone expansion and contraction are shown in green and red, respectively. The numbers separated by slashes (expansions/contractions) indicate the number of... meech a900ips-sm2msWebConsistently, Computational Analysis of (gene) Family Evolution (CAFE) analysis reveals a huge contraction of orthologous gene families in the N. pompilius genome by the observation of 204... meec full formWebWe observed different gene family expansion/contraction histories for plant cell wall degrading enzymes in core polyporoids and phlebioids and captured expansions for genes involved in signalling and regulation in the lineages of white rotters. mee celup johor bahruWebApr 13, 2024 · For each gene, we obtained the rate of its gene family expansion and contraction, as computed using the CAFE algorithm , from ENSEMBL Compara . To test our analysis with a non-redundant set of paralog pairs, we subset each gene family to N-1 paralog pairs (each gene family of N paralogs is a result of at least N-1 duplication events). name filmgrp_bor is not defined